# Zapit Optostim

## Zapit Optostim

- [Zapit Optostim: Introduction](https://zapit.gitbook.io/user-guide/zapit-optostim-introduction.md)
- [Feature List](https://zapit.gitbook.io/user-guide/zapit-optostim-introduction/feature-list.md): Why use Zapit?
- [FAQ](https://zapit.gitbook.io/user-guide/zapit-optostim-introduction/faq.md)
- [Hardware setup](https://zapit.gitbook.io/user-guide/installation-and-setup/hardware-setup.md): Building the system
- [Software setup](https://zapit.gitbook.io/user-guide/installation-and-setup/software-setup.md)
- [Configuring Zapit](https://zapit.gitbook.io/user-guide/installation-and-setup/configuring-zapit.md)
- [General settings](https://zapit.gitbook.io/user-guide/installation-and-setup/configuring-zapit/general-settings.md)
- [NI DAQ settings](https://zapit.gitbook.io/user-guide/installation-and-setup/configuring-zapit/ni-daq-settings.md)
- [Experiment settings](https://zapit.gitbook.io/user-guide/installation-and-setup/configuring-zapit/experiment-settings.md)
- [Scanner & Camera settings](https://zapit.gitbook.io/user-guide/installation-and-setup/configuring-zapit/scanner-and-camera-settings.md)
- [Laser Power Calibration](https://zapit.gitbook.io/user-guide/installation-and-setup/configuring-zapit/laser-power-calibration.md)
- [Blanking settings](https://zapit.gitbook.io/user-guide/installation-and-setup/configuring-zapit/blanking-settings.md)
- [Staying up to date](https://zapit.gitbook.io/user-guide/installation-and-setup/staying-up-to-date.md): Upgrading Zapit
- [Introduction: Using the GUI](https://zapit.gitbook.io/user-guide/using-the-gui/introduction-using-the-gui.md)
- [Scanner Calibration](https://zapit.gitbook.io/user-guide/using-the-gui/scanner-calibration.md): Calibrating the scanners to the camera view
- [Sample Calibration](https://zapit.gitbook.io/user-guide/using-the-gui/sample-calibration.md): Registering the sample to stereotaxic coordinate space
- [StimConfig Editor](https://zapit.gitbook.io/user-guide/using-the-gui/stimconfig-editor.md): Constructing Stimulus Sets
- [Generating stimulus patterns at the CLI](https://zapit.gitbook.io/user-guide/using-the-gui/generating-stimulus-patterns-at-the-cli.md): How to generate complicated stimulus patterns at the command line
- [Advanced Usage](https://zapit.gitbook.io/user-guide/using-the-gui/advanced-usage.md)
- [Introduction: Running Experiments](https://zapit.gitbook.io/user-guide/running-experiments/introduction-running-experiments.md): Integrating photostimulation into your experiments
- [MATLAB](https://zapit.gitbook.io/user-guide/running-experiments/matlab.md)
- [Basic API Usage in MATLAB](https://zapit.gitbook.io/user-guide/running-experiments/matlab/basic-api-usage-in-matlab.md): Intro running experiments in a local MATLAB session
- [Running an Experiment in MATLAB](https://zapit.gitbook.io/user-guide/running-experiments/matlab/running-an-experiment-in-matlab.md): Using the Zapit API in MATLAB
- [Python](https://zapit.gitbook.io/user-guide/running-experiments/python.md)
- [Connecting Python to Zapit](https://zapit.gitbook.io/user-guide/running-experiments/python/connecting-python-to-zapit.md): Installation and basic use of the Zapit Python bridge
- [Basic Zapit API Use in Python](https://zapit.gitbook.io/user-guide/running-experiments/python/basic-zapit-api-use-in-python.md)
- [Remote Control and Other Programming Languages](https://zapit.gitbook.io/user-guide/running-experiments/remote-control-and-other-programming-languages.md): Running Zapit stimuli in other programming languages or from a different PC
- [Project Structure](https://zapit.gitbook.io/user-guide/developer-notes/project-structure.md)
- [Conventions](https://zapit.gitbook.io/user-guide/developer-notes/conventions.md)
- [Hints and Tips](https://zapit.gitbook.io/user-guide/developer-notes/hints-and-tips.md)